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ETHANomics NGS data analysis suite

September 20, 2012

I updated a bunch of my scripts and they are working on Linux and Mac now.  Nothing innovative as I am not a statistician or informatician, but there are a couple nice easy to use scripts that link together the standard steps of RNA-seq and ChIP-seq primary data analysis.  So if anyone is looking for a quick easy way to run DESeq or MACS without having to push all the files though the pipeline one by one, take a look.  All you have to do is throw your fastq files in and type GO.  Well, not exactly but almost that easy.  There are some other useful scripts and files in there as well.  Glad to help anyone who wants to get them running.  You will find them located at the “scripts” tab above.

It’s all detailed here: https://ethanomics.files.wordpress.com/2012/09/ethanomicsngs.pdf

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